distHeatMap: distHeatMap

In WilsonImmunologyLab/LinQView: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity

Description

plot contribution of each modality on a N*N heatmap

Usage

distHeatMap(
  object = NULL,
  assay = "Joint",
  cell.num = 1000,
  group.by = NULL,
  colors = c("yellow", "green"),
  group.bar = TRUE,
  label = FALSE,
  size = 5.5,
  hjust = 0,
  angle = 90,
  dims = 20
)

Arguments

object	seurat object
assay	Assay name. Default is "Joint"
cell.num	number of cells in heatmap. For large datasets, user may want to reduce the number of cells. Default value is set to 1000, indicate 1000 cells at maximum.
group.by	order cells by cell clusters. If set to NULL, will use current ident.
colors	two distinct colors for ADT and RNA.
group.bar	Add a color bar showing group status for cells
label	Label the cell identies above the color bar
size	Size of text above color bar
hjust	Horizontal justification of text above color bar
angle	angle of cluster label
dims	If RNA distance is not available, dims of PCA used to calculate RNA distance.

WilsonImmunologyLab/LinQView documentation built on Jan. 3, 2022, 10 p.m.