dataNormalization: dataNormalization

In WilsonImmunologyLab/LinQView: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity

Description

data normalization for both RNA and ADT data a key step for pre-processing. Call seurat function

Usage

dataNormalization(
  object = NULL,
  scale.factor = 10000,
  margin = 1,
  verbose = TRUE
)

Arguments

object	Seurat object
scale.factor	Sets the scale factor for cell-level normalization. Default is 10000
margin	If performing CLR normalization, normalize across features (1) or cells (2)
verbose	display progress bar for normalization procedure

WilsonImmunologyLab/LinQView documentation built on Jan. 3, 2022, 10 p.m.