depthBasedTreeCluster: Performs a binary search on a depth d such that if...

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Performs a binary search on a depth d such that if depth(LCA(u, v)) <= d then u and v are in the same cluster

Description

Performs a binary search on a depth d such that if depth(LCA(u, v)) <= d then u and v are in the same cluster

Usage

depthBasedTreeCluster(tree, target = 10)

Arguments

tree	object of class phylo
target	number of clusters to attempt to generate

Value

List of clusters, each entry being a vector of indices representing samples in the cluster.

YosefLab/VISION documentation built on Feb. 19, 2023, 9:50 p.m.