generateProjectionsInner: Projects data into 2 dimensions using a variety of linear and...

View source: R/Projections.R

generateProjectionsInnerR Documentation

Projects data into 2 dimensions using a variety of linear and non-linear methods.

Description

Projects data into 2 dimensions using a variety of linear and non-linear methods.

Usage

generateProjectionsInner(
  expr,
  latentSpace,
  projection_genes = NULL,
  projection_methods = NULL,
  K = round(sqrt(ncol(expr)))
)

Arguments

expr

numeric matrix of gene expression

latentSpace

numeric matrix cells x components

projection_genes

character vector of gene names to use for projections

projection_methods

character vector of projection methods to use

K

Number of neighbors to use in projections.

Value

list of Projection objects


YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.