generateProjectionsInner: Projects data into 2 dimensions using a variety of linear and...

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Projects data into 2 dimensions using a variety of linear and non-linear methods.

Description

Projects data into 2 dimensions using a variety of linear and non-linear methods.

Usage

generateProjectionsInner(
  expr,
  latentSpace,
  projection_genes = NULL,
  projection_methods = NULL,
  K = round(sqrt(ncol(expr)))
)

Arguments

expr	numeric matrix of gene expression
latentSpace	numeric matrix cells x components
projection_genes	character vector of gene names to use for projections
projection_methods	character vector of projection methods to use
K	Number of neighbors to use in projections.

Value

list of Projection objects

YosefLab/VISION documentation built on Feb. 19, 2023, 9:50 p.m.