getLatentTrajectory: Get Latent Trajectory

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Get Latent Trajectory

Description

Provides access to the latent trajectory used for local autocorrelation analysis

Usage

## S4 method for signature 'Vision'
getLatentTrajectory(object)

Arguments

object

VISION object

Details

If a latent space was supplied, access it by using getLatentSpace instead

Value

Trajectory object

Examples

## Not run: 

trajectory <- getLatentTrajectory(vis)

# MxM connectivity for network milestones
trajectory@adjMat

# data.frame with the position of cells between milestones
# Columns are:
#    cell
#    from (milestone)
#    to (milestone)
#    position (0 to 1)
trajectory@progressions


## End(Not run)

YosefLab/VISION documentation built on Feb. 19, 2023, 9:50 p.m.