getMetaDifferential: Get Results of One-vs-All Differential Tests with Metadata...

getMetaDifferential,Vision-methodR Documentation

Get Results of One-vs-All Differential Tests with Metadata Variables

Description

Returns the results of running one-vs-all differential tests for each level of every factor meta-variable.

Usage

## S4 method for signature 'Vision'
getMetaDifferential(object)

Arguments

object

VISION object

Details

For numeric meta-variables, the 'stat' is the AUC. For factor meta-variables the stat is the chisq statistic comparing the two groups

The output object has a nested structure:

List of meta-data variables -> List of variable levels -> Results Dataframe

The results dataframe has three columns: "stat", "pValue", "FDR"

Value

nested list of list of data.frame (see details)


YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.