hsCalculateModuleScores: Create Hotspot Modules and calculate module scores given a HS...

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Create Hotspot Modules and calculate module scores given a HS object with local correlations already calculated

Description

Create Hotspot Modules and calculate module scores given a HS object with local correlations already calculated

Usage

hsCalculateModuleScores(
  hs,
  min_gene_threshold = 20,
  clustering_fdr = 0.5,
  plot = F
)

Arguments

hs	the Hotspot object, must have ran compute_local_correlations already
min_gene_threshold	min genes per module
clustering_fdr	p value for clustering genes

Value

the modified hs object

YosefLab/VISION documentation built on Feb. 19, 2023, 9:50 p.m.