processSignatures: Processes signatures on input

View source: R/methods-Signature.R

processSignaturesR Documentation

Processes signatures on input

Description

Removes genes that don't match a gene in the expression matrix Drops signatures with less than 'minSignatureGenes' matching genes

Usage

processSignatures(sigData, exprData, minSignatureGenes, sig_gene_threshold)

Arguments

sigData

list of signature objects

exprData

gene expression matrix

minSignatureGenes

minimum number of genes a signature must match in the expression matrix in order to be retained

sig_gene_threshold

Proportion of cells that a gene must be detected in (nonzero) to be used in signature score calculations.

Value

processedSigData list of signature objects


YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.