read_10x_h5_v3: Read 10x HDF5 Output - CellRanger 3.0
In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds
read_10x_h5_v3 R Documentation
Read 10x HDF5 Output - CellRanger 3.0
Description
Loads 10x output counts and converts expression to gene symbols
Usage
read_10x_h5_v3(h5_file, ensToSymbol = TRUE)
Arguments
h5_file
path to h5 file
ensToSymbol
bool denoting whether or not to perform label conversion
Details
This version uses the h5 file produced by "cellranger count"
This file is typically in a folder that looks like:
outs/filtered_feature_bc_matrices_h5.h5
Value
a list with two items
Expression: sparse count matrix with gene expression counts
Antibody: sparse count matrix with antibody capture counts
YosefLab/VISION documentation built on Feb. 19, 2023, 9:50 p.m.
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| read_10x_h5_v3 | R Documentation |
Read 10x HDF5 Output - CellRanger 3.0
Description
Loads 10x output counts and converts expression to gene symbols
Usage
read_10x_h5_v3(h5_file, ensToSymbol = TRUE)
Arguments
h5_file |
path to h5 file |
ensToSymbol |
bool denoting whether or not to perform label conversion |
Details
This version uses the h5 file produced by "cellranger count"
This file is typically in a folder that looks like:
outs/filtered_feature_bc_matrices_h5.h5
Value
a list with two items Expression: sparse count matrix with gene expression counts Antibody: sparse count matrix with antibody capture counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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