sigsVsProjection_pcn: Evaluates the significance of each meta data numeric...

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Evaluates the significance of each meta data numeric signature vs. a single projections weights

Description

Evaluates the significance of each meta data numeric signature vs. a single projections weights

Usage

sigsVsProjection_pcn(metaData, weights, cells = NULL, computePval = TRUE)

Arguments

metaData	data.frame of meta-data for cells
weights	numeric matrix of dimension N_SAMPLES x N_SAMPLES
cells	list of cell names. Subsets anlysis to provided cells. If omitted, use all cells.
computePval	bool whether to compute p-values. Set to FALSE to save computation time for large numbers of numeric signatures. If set to FALSE, all p-values are reported as 1.0

Value

list:

• consistency: consistency scores

• pvals: pvalues

YosefLab/VISION documentation built on Feb. 19, 2023, 9:50 p.m.