sigsVsProjection_pcn: Evaluates the significance of each meta data numeric...

View source: R/methods-Signature.R

sigsVsProjection_pcnR Documentation

Evaluates the significance of each meta data numeric signature vs. a single projections weights

Description

Evaluates the significance of each meta data numeric signature vs. a single projections weights

Usage

sigsVsProjection_pcn(metaData, weights, cells = NULL, computePval = TRUE)

Arguments

metaData

data.frame of meta-data for cells

weights

numeric matrix of dimension N_SAMPLES x N_SAMPLES

cells

list of cell names. Subsets anlysis to provided cells. If omitted, use all cells.

computePval

bool whether to compute p-values. Set to FALSE to save computation time for large numbers of numeric signatures. If set to FALSE, all p-values are reported as 1.0

Value

list:

  • consistency: consistency scores

  • pvals: pvalues


YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.