filter_genes: filter out genes with low expressions
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
I am not really sure the most efficient way to do this given
that Seurat object does not have rowData. Therefore this function is quite
slow.
Usage
1
2
3
4
5
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7
filter_genes(
x,
quantile_val,
assay = "RNA",
slot_data = "data",
method = "quantile"
)
Arguments
x
a Seurat object
quantile_val
filter away genes whose expressions are below a certain
percentile
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description
I am not really sure the most efficient way to do this given that Seurat object does not have rowData. Therefore this function is quite slow.
Usage
1 2 3 4 5 6 7 | filter_genes(
x,
quantile_val,
assay = "RNA",
slot_data = "data",
method = "quantile"
)
|
Arguments
x |
a Seurat object |
quantile_val |
filter away genes whose expressions are below a certain percentile |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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