get_DE_from_KL: Differential branching gene trajectoy analysis
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Differential branching gene trajectoy analysis
Usage
1
get_DE_from_KL(x, num1, num2, divergence = "WD")
Arguments
x
a dataframe produced by my BRGP script, containing the columns:
'branch' for branch information, 'x' for pseudotime, 'mean_' and 'var_' for
the mean and variance of each gene
num1
the name of one of the branches to compare
num2
similar to num1
divergence
which divergence method to quantify the difference between
the 2 distributions. Only support 'WD' (2-Wasserstein distance) and 'KL'
(Kullback-Leibler divergence)
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description
Differential branching gene trajectoy analysis
Usage
1 | get_DE_from_KL(x, num1, num2, divergence = "WD")
|
Arguments
x |
a dataframe produced by my BRGP script, containing the columns: 'branch' for branch information, 'x' for pseudotime, 'mean_' and 'var_' for the mean and variance of each gene |
num1 |
the name of one of the branches to compare |
num2 |
similar to |
divergence |
which divergence method to quantify the difference between the 2 distributions. Only support 'WD' (2-Wasserstein distance) and 'KL' (Kullback-Leibler divergence) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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