get_cell_similarity: Calculate cell-cell similarity using quadratic programming...
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Calculate cell-cell similarity using quadratic programming from DeConRNASeq

get_cell_similarity(
  x,
  group.by,
  select_types,
  compare_types = NULL,
  slot_name = "data",
  assay_name = "RNA"
)

`select_types`	for which cell types or cell features are similarity estimates computed
`compare_types`	to which cell types or cell features are those in `select_types` compared with. If NULL, it would be every types except `select_types`

cell similarity matrix of N X M, where N is the sample and M is the cell type to compare

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.

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