get_gene_list: Obtain gene list from DE gene results
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
This function obtains a list of genes, the input format to GSEA
or over-representation test, from the top DE genes. For parameter setting,
see run_GSEA
Usage
1
2
3
4
5
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8
get_gene_list(
markers,
cluster_num,
organism_db,
gene_col = "feature",
cluster_col = "group",
FC = "logFC"
)
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description
This function obtains a list of genes, the input format to GSEA
or over-representation test, from the top DE genes. For parameter setting,
see run_GSEA
Usage
1 2 3 4 5 6 7 8 | get_gene_list(
markers,
cluster_num,
organism_db,
gene_col = "feature",
cluster_col = "group",
FC = "logFC"
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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