mat_to_seurat: Convert matrix into a list of seurat objects based on branch...
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Usage
Arguments
Value
Description
Convert matrix into a list of seurat objects based on branch assignment
Usage
1
mat_to_seurat(exp_mat, ref_meta, branch_lab, label_list)
Arguments
exp_mat
a matrix with rows being the cells and columns being the
genes. There must be rownames and colnames
ref_meta
a dataframe containing information for the cells in exp_mat
branch_lab
a vector with the same length as the row number of
exp_mat, containing the branch assignment of each cell
label_list
per item of returned seurat object in the return value
list, cells with which labels are chosen. It should be a list
Value
a list of seurat objects of different branch assignments
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description Usage Arguments Value
Description
Convert matrix into a list of seurat objects based on branch assignment
Usage
1 | mat_to_seurat(exp_mat, ref_meta, branch_lab, label_list)
|
Arguments
exp_mat |
a matrix with rows being the cells and columns being the genes. There must be rownames and colnames |
ref_meta |
a dataframe containing information for the cells in |
branch_lab |
a vector with the same length as the row number of
|
label_list |
per item of returned seurat object in the return value list, cells with which labels are chosen. It should be a list |
Value
a list of seurat objects of different branch assignments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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