phase_PC_plot: Correlation of phase score with PC
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Usage
Arguments
Examples
Description
Correlation of phase score with PC
Usage
1
phase_PC_plot(ans, x, corr_feature, DR = "pca", num_dim = 1, AP = NULL)
Arguments
x
a seurat object
corr_feature
which feature is the selected DR correlated with
num_dim
which dimension in the dimensionality reduction (DR) method to use
Examples
1
2
3
exp_mat <- as.matrix (Seurat::GetAssayData (all_data, assay='RNA', slot='data'))
ans <- get_phase_score (exp_mat )
phase_PC_plot (ans, all_data, 'broad_type')
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description Usage Arguments Examples
Description
Correlation of phase score with PC
Usage
1 | phase_PC_plot(ans, x, corr_feature, DR = "pca", num_dim = 1, AP = NULL)
|
Arguments
x |
a seurat object |
corr_feature |
which feature is the selected DR correlated with |
num_dim |
which dimension in the dimensionality reduction (DR) method to use |
Examples
1 2 3 | exp_mat <- as.matrix (Seurat::GetAssayData (all_data, assay='RNA', slot='data'))
ans <- get_phase_score (exp_mat )
phase_PC_plot (ans, all_data, 'broad_type')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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