plot_DE_genes: Visualise DE genes

In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description

Visualise DE genes

Usage

plot_DE_genes(
  x,
  markers,
  top_gene = 1,
  by_group = "cluster",
  show_group = "Type",
  show_heatmap = TRUE
)

Arguments

x	Seurat object
markers	DE gene marker dataframe computed by FindAllMarkers. Alternatively, one can parse a vector of marker genes.
top_gene	how many genes to show per group
by_group	which group of features in which the top DE genes are selected
show_group	which group of features in which the expression of top DE genes are plotted against
show_heatmap	whether to show heatmap or violin plot

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.