Plot gene-gene correlation network in a WGCNA cluster
1 2 3 4 5 6 7 8 9 10 | plot_WGCNA_net(
x,
color_row,
celltype = "all",
feature = "revised",
scale_edge_weight = 0.2,
scale_node_size = 0.2,
threshold = 0.5,
return_igraph = F
)
|
x |
a Seurat object |
color_row |
a vector of gene names |
feature |
which metadata entry the cell type information is stored.
Ignore it if |
scale_edge_weight |
adjust the weight of the lines |
scale_node_size |
adjust the relative node size |
threshold |
only gene-gene pair with correlation beyond a threshold will be selected |
return_igraph |
whether igraph object will be returned or whether it will be plotted |
cell_type |
the cell type in which correlation is computed. By default, all cell types will be used |
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