plot_cell_similarity: Plot cell-cell similarity in a line graph

Description Usage Arguments

Description

Plot cell-cell similarity in a line graph

Usage

1
plot_cell_similarity(x, cell_sim, group.by, DR = "pca", dims = 1, AP = NULL)

Arguments

x

a Seurat object

cell_sim

cell similarity matrix of N X M, where N is the sample and M is the cell type. M must be equal to the column number of x

group.by

which feature to color

DR

dimensionality reduction assays in x

dims

which dimension to plot along the x axis

aes_param

aesthetic parameters passing to theme_TB


Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.