Plot cell-cell similarity in a line graph
1 | plot_cell_similarity(x, cell_sim, group.by, DR = "pca", dims = 1, AP = NULL)
|
x |
a Seurat object |
cell_sim |
cell similarity matrix of N X M, where N is the sample and M
is the cell type. M must be equal to the column number of |
group.by |
which feature to color |
DR |
dimensionality reduction assays in |
dims |
which dimension to plot along the x axis |
aes_param |
aesthetic parameters passing to |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.