plot_colony_count: Boxplot of the colony features in each siRNA condition
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Boxplot of the colony features in each siRNA condition

plot_colony_count(
  dat,
  y_val = "rel_num_colony",
  shape_by = "Date",
  control_condition = "GFP",
  plot_pval = "p.signif",
  plot_type = "box",
  paired_test = F,
  display_shape = T,
  new_level = NULL,
  AP = NULL
)

`dat`	a dataframe from `colony_count`
`y_val`	y axis of the boxplot
`control_condition`	which is the control group in the `condition` column
`plot_pval`	which pvalue format to plot, can be 'p.adj' for the BH adjusted p value score, 'p.signif' for the symbol for 'p.adj' or 'p' for unadjusted p value