raw_to_seurat: Load pseudotime information to Seurat
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Usage
Arguments
Value
Description
Obtain the mean values and store them in Seurat objects
according to the branch assignment indicated by label_list
Usage
1
raw_to_seurat(pred_all, label_list)
Arguments
pred_all
dataframe generated from pseudotime analysis. It contains
the mean and variance of all the genes, starting with 'mean_' and
'variance_' respectively. In addition, it has a column called x containing
pseudotime information and a column called branch for branch assignment
label_list
per item of returned seurat object in the return value
list, cells with which labels are chosen. It should be a list
Value
a list of seurat objects of different branch assignments
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description Usage Arguments Value
Description
Obtain the mean values and store them in Seurat objects
according to the branch assignment indicated by label_list
Usage
1 | raw_to_seurat(pred_all, label_list)
|
Arguments
pred_all |
dataframe generated from pseudotime analysis. It contains
the mean and variance of all the genes, starting with 'mean_' and
'variance_' respectively. In addition, it has a column called |
label_list |
per item of returned seurat object in the return value list, cells with which labels are chosen. It should be a list |
Value
a list of seurat objects of different branch assignments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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