save_to_csv: Save Seurat object as csv

In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description

save the expression matrix and metadata of a Seurat object

Usage

save_to_csv(
  x,
  directory = NULL,
  assay = NULL,
  slot_data = "data",
  select_cells = NULL,
  select_genes = NULL,
  label = "",
  save_result = T
)

Arguments

x	a seurat object
directory	where the results are saved
select_cells	which cells to be saved
select_genes	which genes to be saved, or the number of top variably expressed genes
save_result	if FALSE, the expression matrix is the output. If no directory is supplied, this argument is set FALSE automatically

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.