seurat_violin: Similar to Seurat VlnPlot, with more graphic controls

In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description

This function was called 'seurat_violin' originally because of re-implementation of violin plot in seurat. Its functionality has now expanded to include scatter plots and boxplots.

Usage

seurat_violin(
  x,
  features,
  group.by,
  assay = "RNA",
  slot_data = "data",
  num_col = NULL,
  free_xy = "fixed",
  AP = NULL,
  plot_type = "box",
  color.by = NULL,
  ...
)

Arguments

x	a Seurat object
features	genes to plot, which will be split over by facets
group.by	by which cell feature
num_col	in how many columns the facets are arranged
plot_type	can be 'box', 'violin' or 'scatter'.
...	additional arguments for custom_tick
color_by	only effective when plot_type is 'scatter'

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.