sim_emap: Plot enrichment pie chart with simplified terms

In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description

Plot enrichment pie chart with simplified terms

Usage

sim_emap(
  x,
  showCategory = 30,
  rename_vec = NULL,
  color = "p.adjust",
  layout = "nicely",
  split = NULL,
  pie = "equal",
  legend_n = 5,
  cex_category = NULL,
  pie_scale = NULL,
  cex_line = 1,
  min_edge = 0.2,
  cex_label_category = 1,
  node_label_size = NULL,
  show.legend = F,
  vert_just = 1,
  repel_text = T,
  force_repel = 1,
  AP = NULL
)

Arguments

split	separate result by 'category' variable
pie	proportion of clusters in the pie chart, one of 'equal' (default) or 'Count'
legend_n	number of circle in legend
pie_scale	scale of pie chart or point, this parameter has been changed to "node_scale"
cex_line	scale of line width
min_edge	minimum percentage of overlap genes to display the edge, should between 0 and 1, default value is 0.2
vert_just	vertically adjust the label position to prevent overlap with the pie
repel_text	whether to use ggrepel
force_repel	how far the labels are repelled from the original locations

Author(s)

Guangchung Yu

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.