subset_celltype: Select Seurat object by cell type
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Select Seurat object by cell type
Usage
1
2
3
4
5
6
7
8
subset_celltype(
x,
top_markers = NULL,
cluster_num = "EVT",
select_type = "seurat_clusters",
assay = "RNA",
slot_data = "data"
)
Arguments
x
a Seurat object
top_markers
should be a dataframe generated by the Seurat FindMarkers
gene. Otherwise, the top variable features will be selected
cluster_num
if it is 'all', then all cells will be selected
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Select Seurat object by cell type
Usage
1 2 3 4 5 6 7 8 | subset_celltype(
x,
top_markers = NULL,
cluster_num = "EVT",
select_type = "seurat_clusters",
assay = "RNA",
slot_data = "data"
)
|
Arguments
x |
a Seurat object |
top_markers |
should be a dataframe generated by the Seurat FindMarkers gene. Otherwise, the top variable features will be selected |
cluster_num |
if it is 'all', then all cells will be selected |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.