term_gene_labels: Obtain the label information for enrichment barplot
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Usage
Arguments
Value
Description
This function joins the enrichment term with the top
differentially expressed genes in a single string, that will be shown in the
enrichment barplot labels.
Usage
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term_gene_labels(
xx,
sum_gsea,
organism_db,
show_gene_labels = 3,
markers = NULL,
category_col = "category",
cluster_col = "cluster",
term_col = "termID"
)
Arguments
xx
raw dataframe from GSEA
sum_gsea
a dataframe generated from summarise_gsea
markers
a dataframe generated from find_DE_genes. If NULL, the
genes will be ordered alphabetically.
Value
a character vector of labels
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description Usage Arguments Value
Description
This function joins the enrichment term with the top differentially expressed genes in a single string, that will be shown in the enrichment barplot labels.
Usage
1 2 3 4 5 6 7 8 9 10 | term_gene_labels(
xx,
sum_gsea,
organism_db,
show_gene_labels = 3,
markers = NULL,
category_col = "category",
cluster_col = "cluster",
term_col = "termID"
)
|
Arguments
xx |
raw dataframe from GSEA |
sum_gsea |
a dataframe generated from |
markers |
a dataframe generated from |
Value
a character vector of labels
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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