time_cluster_plot: Plot the clustering results of times against the peak...
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Plot the clustering results of times against the peak gradient

time_cluster_plot(
  peak_plot,
  metadata,
  show_text_prop = 0.95,
  color_by = "cluster",
  color_bar = "broad_type",
  time_col = "MGP_PT",
  exclude_perc = 0.02,
  vjust = 0,
  thickness_ratio = 0.05,
  repel_force = 1,
  repel_point = NULL,
  ribbon_alpha = 1,
  AP = NULL,
  overlap = T
)

`peak_plot`	a dataframe generated by `find_peak` or `find_transition_from_seurat`. It must contain the column `peak_time` and `val`, the latter for selection of the most significant genes
`metadata`	a dataframe for adding the cell types colors
`color_by`	which column in `peak_plot` to color the points
`color_bar`	which column in `metadata` contains cell type information to provide a cellular context for the pseudotime line
`time_col`	which column in `metadata` contains pseudotime information for each cell
`exclude_perc`	by how much percent the pseudotime line should be truncated. This is because pseudotime points sometimes contain some outliers that may create a lot of white space.