Files in ZJUDBlab/InterCellDB
Tool and Database for Analyzing Interactions
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/FullView.R
R/InterCellDBclass.R
R/TgView-part1.R
R/TgView-part2.R
R/TgView-part3.R
R/TgView-part4.R
R/TgView-prep.R
R/data.R
R/utility-output.R
R/utility-pkg-param.R
R/utils.R
README.md
data/Uniprot.key.map.list.rda
data/actions.human.ref.db.rda
data/actions.mouse.ref.db.rda
data/anno.location.human.ref.db.rda
data/anno.location.mouse.ref.db.rda
data/anno.type.human.ref.db.rda
data/anno.type.mouse.ref.db.rda
data/genes.human.ref.db.rda
data/genes.mouse.ref.db.rda
data/go.human.ref.db.rda
data/go.mouse.ref.db.rda
data/pairs.human.db.rda
data/pairs.mouse.db.rda
man/.DS_Store
man/AnalyzeInterInAction.Rd
man/AnalyzeInterInFullView.Rd
man/AnalyzeInterSpecificity.Rd
man/CheckSpeciesValidity.Rd
man/ClusterSplit-InterCell.Rd
man/CreateDBPackObject.Rd
man/CreateInterCellObject.Rd
man/DataPrep.AddExprs.Rd
man/DataPrep.GenStdGenePairs.from.VEinfos.Rd
man/DataPrep.RemapClustersMarkers.Rd
man/DoPartUnique.Rd
man/ExtractTargetOnepairClusters.Rd
man/FastAlignPairs.Rd
man/FetchGeneOI.Rd
man/FetchInterOI.Rd
man/FormatCustomGenePairs.Rd
man/FullViewResult-InterCell.Rd
man/GenePairSplit-InterCell.Rd
man/GenerateMapDetailOnepairClusters.Rd
man/GenerateVEinfos.Rd
man/GetOneInter.Rd
man/GetResultFullView.Rd
man/GetResultPieActionEffect.Rd
man/GetResultPieActionMode.Rd
man/GetResultTgCellPlot.Rd
man/GetResultTgCrosstalk.Rd
man/GetResultTgSpecificity.Rd
man/Inside.DummyActionsRefDB.Rd
man/Inside.DummyFgenes.Rd
man/Inside.DummyGORefDB.Rd
man/Inside.DummyGenesRefDB.Rd
man/InsideObjectDBPack.Rd
man/InsideObjectInterCell.Rd
man/InsideParam.species.Rd
man/InterCell-class.Rd
man/InterCellDBPack-class.Rd
man/ListAllClusters.Rd
man/ListClusterGroups.Rd
man/ListGeneSelectionProperty.Rd
man/MergeDBSubset.Rd
man/MergeGeneOI.Rd
man/RefDatabase-InterCell.Rd
man/ReplaceClusterName.Rd
man/ReverseOddEvenCols.Rd
man/SelectDBSubset.Rd
man/SelectInterSubset.Rd
man/TgActionComp-InterCell.Rd
man/TgActionPairs-InterCell.Rd
man/TgItInfo-InterCell.Rd
man/TgSpGenes-InterCell.Rd
man/TgVEInfo-InterCell.Rd
man/TgView.formula.onLogFC.default.Rd
man/TgView.formula.onPVal.default.Rd
man/Tool.FindGenesFromGO.Rd
man/Tool.GenPermutation.Rd
man/Tool.ShowGraph.Rd
man/Tool.SplitToGenDataFrame.Rd
man/Tool.WriteTables.Rd
man/Uniprot.key.map.list.Rd
man/actions.human.ref.db.Rd
man/actions.mouse.ref.db.Rd
man/anno.location.human.ref.db.Rd
man/anno.location.mouse.ref.db.Rd
man/anno.type.human.ref.db.Rd
man/anno.type.mouse.ref.db.Rd
man/genes.human.ref.db.Rd
man/genes.mouse.ref.db.Rd
man/go.human.ref.db.Rd
man/go.mouse.ref.db.Rd
man/kmusthave.colnames.Rd
man/pairs.human.db.Rd
man/pairs.mouse.db.Rd
man/pred-action-effect.Rd
man/pred-action-mode.Rd
man/pred-exprs-change.Rd
tutorials/Basic-steps.md
tutorials/files-Basic-steps/act-effect.png
tutorials/files-Basic-steps/act-mode.png
tutorials/files-Basic-steps/eval-specificity.png
tutorials/files-Basic-steps/fullview-res.png
tutorials/files-Basic-steps/inter-rank-gene-pair.png
tutorials/files-Basic-steps/spatial-pattern.png
