Man pages for ZJUDBlab/InterCellDB
Tool and Database for Analyzing Interactions
| actions.human.ref.db | Actions database for human |
| actions.mouse.ref.db | Actions database for mouse |
| AnalyzeInterInAction | Analysis Composition of Actions |
| AnalyzeInterInFullView | Perform Network Analysis |
| AnalyzeInterSpecificity | Analyze Gene Pairs by Specificity |
| anno.location.human.ref.db | Annotation database for subcellular location of human genes |
| anno.location.mouse.ref.db | Annotation database for subcellular location of mouse genes |
| anno.type.human.ref.db | Annotation database for molecular function of human genes |
| anno.type.mouse.ref.db | Annotation database for molecular function of mouse genes |
| CheckSpeciesValidity | Check Species |
| ClusterSplit-InterCell | Using Cluster Group Split |
| CreateDBPackObject | Create InterCellDBPack Object |
| CreateInterCellObject | Analyze interaction network in full view |
| DataPrep.AddExprs | Add Expression Data in InterCell Object |
| DataPrep.GenStdGenePairs.from.VEinfos | Generate Gene Pairs in Standard Format |
| DataPrep.RemapClustersMarkers | Remap Gene Symbols to Their Authorized Genenames |
| DoPartUnique | Speed-up Doing Unique for Data.frame |
| ExtractTargetOnepairClusters | Extract Pairs from One Interaction |
| FastAlignPairs | Fast Align Gene Pairs |
| FetchGeneOI | Fetch Genes of Interest |
| FetchInterOI | Fetch One Interaction |
| FormatCustomGenePairs | Format User Given Gene Pairs |
| FullViewResult-InterCell | Using FullView Result |
| GenePairSplit-InterCell | Using Gene Pair Split |
| GenerateMapDetailOnepairClusters | Collect Gene Pairs with Actions |
| GenerateVEinfos | Generate Standard Data for One Interaction |
| genes.human.ref.db | Reference database of human genes |
| genes.mouse.ref.db | Reference database of mouse genes |
| GetOneInter | Get One Interaction |
| GetResultFullView | Get Result for Network Analysis |
| GetResultPieActionEffect | Get Result for Composition of Action Effect |
| GetResultPieActionMode | Get Result for Composition of Action Mode |
| GetResultTgCellPlot | Get Result for Sptial Pattern |
| GetResultTgCrosstalk | Filter Important Gene Pairs in One Interaction |
| GetResultTgSpecificity | Get Result for Specificity Analysis |
| go.human.ref.db | GO reference database for human |
| go.mouse.ref.db | GO reference database for mouse |
| Inside.DummyActionsRefDB | Description of parameter actions.ref.db |
| Inside.DummyFgenes | Description of parameter fgenes.remapped.all |
| Inside.DummyGenesRefDB | Description of parameter genes.ref.db |
| Inside.DummyGORefDB | Description of parameter go.ref.db |
| InsideObjectDBPack | Description of parameter object for InterCell-class |
| InsideObjectInterCell | Description of parameter object for InterCell-class |
| InsideParam.species | Description of parameter species |
| InterCell-class | The InterCell Class |
| InterCellDBPack-class | The Class for Database Storage in InterCellDB |
| kmusthave.colnames | Predefined data format in given fgenes |
| ListAllClusters | List cell clusters |
| ListClusterGroups | List Cluster Groups |
| ListGeneSelectionProperty | List Options for Gene Selection |
| MergeDBSubset | Merge Database |
| MergeGeneOI | Merge Gene of Interest |
| pairs.human.db | Experiments database of interaction pairs of human genes |
| pairs.mouse.db | Database of interaction pairs of mouse genes |
| pred-action-effect | Predefined Action Effect & Color Usage for It |
| pred-action-mode | Predefined Action Mode & Color Usage for It |
| pred-exprs-change | Options for Expression Change |
| RefDatabase-InterCell | Using Reference Database |
| ReplaceClusterName | Replace Cluster name |
| ReverseOddEvenCols | Permutate Reverse Order of Odds and Evens |
| SelectDBSubset | Select Subset of Gene Pair Database |
| SelectInterSubset | Select Some Gene Pairs from One Interaction |
| TgActionComp-InterCell | Using TargetView Action Composition |
| TgActionPairs-InterCell | Using TargetView Action Pairs |
| TgItInfo-InterCell | Using Target Plain Information |
| TgSpGenes-InterCell | Using TargetView Pair Specificity |
| TgVEInfo-InterCell | Using TargetView VEinfo |
| TgView.formula.onLogFC.default | Formula on Power for One Gene Pair |
| TgView.formula.onPVal.default | Formula on Confidence for One Gene Pair |
| Tool.FindGenesFromGO | Find Genes Annotated in Specific GO Terms |
| Tool.GenPermutation | Generate Permutations of Count Matrix |
| Tool.ShowGraph | Tool for showing gragh |
| Tool.SplitToGenDataFrame | Split Character To Data.frame |
| Tool.WriteTables | Tool for write tables in csv |
| Uniprot.key.map.list | Merged Uniprot Keywords |
