PlotPhyReport: A multi-plot wrapper to display a phylogenetic tree of top-10...
In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite
View source: R/PlotPhyReport.R
PlotPhyReport R Documentation
A multi-plot wrapper to display a phylogenetic tree of
top-10 hits from palmDB, an MSA plot, and a bar plot of
percentage identity matched.
Description
A multi-plot wrapper to display a phylogenetic tree of
top-10 hits from palmDB, an MSA plot, and a bar plot of
percentage identity matched.
Usage
PlotPhyReport(input.msa, tree.df, tree.phy)
Arguments
input.msa
msa file path relative to .fev
tree.df
data.frame, merged tree labels and pro.df. use get.proPhy
tree.phy
phylo object. use read.phy
Value
A grid-table object. Dimension standard is 800 x 600 px.
Examples
data("waxsys.tree.df")
data("waxsys.tree.phy")
data("waxsys.input.msa")
phyReport <- PlotPhyReport(waxsys.input.msa, waxsys.tree.df, waxsys.tree.phy)
ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.
R Package Documentation
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View source: R/PlotPhyReport.R
| PlotPhyReport | R Documentation |
A multi-plot wrapper to display a phylogenetic tree of top-10 hits from palmDB, an MSA plot, and a bar plot of percentage identity matched.
Description
A multi-plot wrapper to display a phylogenetic tree of top-10 hits from palmDB, an MSA plot, and a bar plot of percentage identity matched.
Usage
PlotPhyReport(input.msa, tree.df, tree.phy)
Arguments
input.msa |
msa file path relative to .fev |
tree.df |
data.frame, merged tree labels and pro.df. use get.proPhy |
tree.phy |
phylo object. use read.phy |
Value
A grid-table object. Dimension standard is 800 x 600 px.
Examples
data("waxsys.tree.df")
data("waxsys.tree.phy")
data("waxsys.input.msa")
phyReport <- PlotPhyReport(waxsys.input.msa, waxsys.tree.df, waxsys.tree.phy)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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