PlotProjExpr: Plot the expression of each palm_id-sra (upto top 10) but...
In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite
PlotProjExpr R Documentation
Plot the expression of each palm_id-sra (upto top 10)
but grouped by BioProject to look for intra-experiment outliers
Description
Plot the expression of each palm_id-sra (upto top 10)
but grouped by BioProject to look for intra-experiment outliers
Usage
PlotProjExpr(palm.sra = NULL, ntop = 10)
Arguments
palm.sra
data.frame, created from get.palmSra() [NULL]
ntop
numeric, number of sOTU to return in plot [10]
Value
A ggplot of per-sOTU expression
Examples
# Load Waxsystermes Example data
data("waxsys.palm.sra")
Plot the contig-coverage of the top10 related sOTU
PlotSraExpr( waxsys.palm.sra )
ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.
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| PlotProjExpr | R Documentation |
Plot the expression of each palm_id-sra (upto top 10) but grouped by BioProject to look for intra-experiment outliers
Description
Plot the expression of each palm_id-sra (upto top 10) but grouped by BioProject to look for intra-experiment outliers
Usage
PlotProjExpr(palm.sra = NULL, ntop = 10)
Arguments
palm.sra |
data.frame, created from get.palmSra() [NULL] |
ntop |
numeric, number of sOTU to return in plot [10] |
Value
A ggplot of per-sOTU expression
Examples
# Load Waxsystermes Example data
data("waxsys.palm.sra")
Plot the contig-coverage of the top10 related sOTU
PlotSraExpr( waxsys.palm.sra )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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