get.sraGeo: get.sraGeo

In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite

get.sraGeo

Description

Retrieve the geo_coordinates for a set of SRA 'run_id'

Usage

get.sraGeo(run_ids = NULL, biosample_ids = NULL, con, ordinal = FALSE)

Arguments

run_ids	character, SRA 'run_id'
biosample_ids	character, BioSample 'biosample_id'
con	pq-connection, use SerratusConnect()
ordinal	boolean, return 'run_ids' ordered vector [F]

Value

data.frame, lon and lat numeric vectors

Examples

con <- SerratusConnect()
palm.geo   <- get.sraGeo(run_ids = "SRR9968562", con = con)

ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.