geoFilter2: Conversion between run_ids and geo objects often contain...
In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite

geoFilter2

R Documentation

Conversion between run_ids and geo objects often contain NA/NULL values This removes NA-containing rows

Description

Conversion between run_ids and geo objects often contain NA/NULL values This removes NA-containing rows

Usage

geoFilter2(palm.sra, wobble = FALSE, wradius = 0.005)

Arguments

`palm.sra`	data.frame, output df from get.sraGeo()
`wobble`	boolean, add a wobble to each point to prevent overplotting [FALSE]
`wradius`	numeric, maximum magnitude of wobble [0.005]

Value

modified palm.sra data.frame

Examples


data("waxsys.palm.sra")
# waxsys.palm.sra
# -- 4159 rows

waxsys.geo.filtered <- geoFilter2(waxsys.palm.sra)
# -- 2300 rows

# 2300 / 4159 SRA-libraries have associated geospatial meta-data

ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.