get.sraBio2: get.sraBio2

In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite

get.sraBio2

Description

Retrieve the "BioSample", "BioProject", or "Both" field for a set of input SRA 'run_id'

Usage

get.sraBio2(run_ids, con, biodb = "BioSample", ordinal = FALSE)

Arguments

run_ids	character, SRA 'run_id'
con	pq-connection, use SerratusConnect()
biodb	character, one of "both", "BioProject", or ["BioSample"]
ordinal	boolean, return 'run_ids' ordered vector [FALSE]

Value

data.frame, run_id, biosample character vectors

Examples

# SRA Library of interest
con <- SerratusConnect()
library.bioSample   <- get.sraBio( 'SRR9968562' , con)

ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.