linkGB: Parse an input sequence into a GenBank HTML link

In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite

Parse an input sequence into a GenBank HTML link

Description

Parse an input sequence into a GenBank HTML link

Usage

linkGB(accession, label = "<accession>", DB = "protein", prefix_text = NULL)

Arguments

accession	character, header for blast search
label	character, Display string or accesion var ["<accesion>"]
DB	character, GenBank database to prefix ["protein"]
prefix_text	character, prefix to add to label when using accession

Value

character, html link for click to search

Examples

gb.link <- linkGB("VVX76773.1")
gb.link <- linkGB("NC_045512.2", label = "SARSCOV2", DB = "nuccore")

ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.