get.palmTax: get.palmTax

In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite

get.palmTax

Description

Retrieve the taxonomic identifiers for a set of 'palm_id' for a given rank.

Usage

get.palmTax(palm_ids, con, rank = "family", ordinal = FALSE)

Arguments

palm_ids	character, set of 'palm_id' to lookup in palmdb
con	pq-connection, use SerratusConnect()
rank	character, taxonomic rank to retrieve. One of "species", "genus", "family" (Default), "phylum"
ordinal	boolean, return an ordered vector based on input 'palm_ids'

Value

character, unique 'tax_id' vector (i.e. "Coronaviridae")

Examples

con <- SerratusConnect()

# Return species-identifiers for a set of palmprints (uxxx)
get.palmTax(c("u2", "u1337"), con, rank = "species")

ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.