get_regulon_thresholds: get_regulon_thresholds
In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.
get_regulon_thresholds R Documentation
get_regulon_thresholds
Description
Get the AUC thresholds for the regulons in the given loom file
Usage
get_regulon_thresholds(loom, only.selected = TRUE)
Arguments
loom
.loom file name
onlySelected
Whether to return only the selected threshold for each regulon (as vector),
or also the alternative thresholds calculated by AUCell (as list).
Examples
loomPath <- file.path(system.file('extdata', package='SCopeLoomR'), "example.loom")
loom <- open_loom(loomPath)
thresholds <- get_regulon_thresholds(loom)
head(thresholds)
aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.
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| get_regulon_thresholds | R Documentation |
get_regulon_thresholds
Description
Get the AUC thresholds for the regulons in the given loom file
Usage
get_regulon_thresholds(loom, only.selected = TRUE)
Arguments
loom |
.loom file name |
onlySelected |
Whether to return only the selected threshold for each regulon (as vector), or also the alternative thresholds calculated by AUCell (as list). |
Examples
loomPath <- file.path(system.file('extdata', package='SCopeLoomR'), "example.loom")
loom <- open_loom(loomPath)
thresholds <- get_regulon_thresholds(loom)
head(thresholds)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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