update_cluster_descriptions_by_cluster_annotation_mapping_df: update_cluster_descriptions_by_cluster_annotation_mapping_df

In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.

update_cluster_descriptions_by_cluster_annotation_mapping_df

Description

Update the cluster descriptions of the clusters of the given clustering_name

Usage

update_cluster_descriptions_by_cluster_annotation_mapping_df(
  loom,
  clustering.name,
  annotation.df = NULL,
  annotation.df.cluster.id.column.name = NULL,
  annotation.df.annotation.column.name = NULL,
  in.place = TRUE
)

Arguments

loom	The loom file handler.
clustering.name	The name of the clustering.
annotation.df	The data.frame containing the cluster annotatiion mapping
annotation.df.cluster.id.column.name	The column name of the given annotation.df containing the cluster ID values
annotation.df.annotation.column.name	The column name of the given annotation.df containing the annotation values.
in.place	If true update the given loom, otherwise return the update global meta data.

aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.