diff_state_significant_lfc: Prepare significant logFC vector named with gene names.
In altairwei/rhapsodykit: A Set of Tools for BD Rhapsody WTA Downstream Analysis
View source: R/differential_state.R
diff_state_significant_lfc R Documentation
Prepare significant logFC vector named with gene names.
Description
Prepare significant logFC vector named with gene names.
Usage
diff_state_significant_lfc(ds, contrasts, clusters, FDR = 0.05, logFC = 1)
Arguments
ds
Results returned by pbDS or
pseudobulk_diff_state
contrasts
choose a contrast.
clusters
choose a cluster.
FDR
Upper limit of FDR.
logFC
Lower limit of absolute value of logFC.
Value
A logFC vector named gene names
altairwei/rhapsodykit documentation built on Feb. 1, 2023, 8:52 a.m.
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View source: R/differential_state.R
| diff_state_significant_lfc | R Documentation |
Prepare significant logFC vector named with gene names.
Description
Prepare significant logFC vector named with gene names.
Usage
diff_state_significant_lfc(ds, contrasts, clusters, FDR = 0.05, logFC = 1)
Arguments
ds |
Results returned by |
contrasts |
choose a contrast. |
clusters |
choose a cluster. |
FDR |
Upper limit of FDR. |
logFC |
Lower limit of absolute value of logFC. |
Value
A logFC vector named gene names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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