make_integrated_pseudo_bulk: Make pseudo-bulk RNA-Seq data from a Seurat object.
In altairwei/rhapsodykit: A Set of Tools for BD Rhapsody WTA Downstream Analysis
make_integrated_pseudo_bulk R Documentation
Make pseudo-bulk RNA-Seq data from a Seurat object.
Description
Make pseudo-bulk RNA-Seq data from a Seurat object.
Usage
make_integrated_pseudo_bulk(
seurat_object,
type = c("counts", "logcounts", "cpm", "vstresiduals")
)
Arguments
seurat_object
Seurat object after integrated analysis.
The sample and group infromation must exist in
seurat_object@meta.data slot.
type
Value type of pseudo-bulk data.
Value
An array with three dimensions. The three dimensions represent
genes (rownames), samples (colnames), and cell subpopulation, respectively.
altairwei/rhapsodykit documentation built on Feb. 1, 2023, 8:52 a.m.
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| make_integrated_pseudo_bulk | R Documentation |
Make pseudo-bulk RNA-Seq data from a Seurat object.
Description
Make pseudo-bulk RNA-Seq data from a Seurat object.
Usage
make_integrated_pseudo_bulk(
seurat_object,
type = c("counts", "logcounts", "cpm", "vstresiduals")
)
Arguments
seurat_object |
Seurat object after integrated analysis.
The |
type |
Value type of pseudo-bulk data. |
Value
An array with three dimensions. The three dimensions represent genes (rownames), samples (colnames), and cell subpopulation, respectively.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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