make_pseudo_bulk: Make pseudo-bulk RNA-Seq from scRNA-Seq.

In altairwei/rhapsodykit: A Set of Tools for BD Rhapsody WTA Downstream Analysis

Make pseudo-bulk RNA-Seq from scRNA-Seq.

Description

Make pseudo-bulk RNA-Seq from scRNA-Seq.

Usage

make_pseudo_bulk(
  data_folders,
  normalization = "LogNormalize",
  method = "avg",
  ...
)

Arguments

data_folders	A vector of Rhapsody WTA results folder path.
normalization	Normalization methods to apply. Available values are same as Seurat::NormalizeData plus "SCTransform".
method	Pseudo-bulk method to apply. Available values are avg and sum .
...	pass to normalization functions.

Value

A data.frame containing pseudo-bulk RNA-Seq expression data.

altairwei/rhapsodykit documentation built on Feb. 1, 2023, 8:52 a.m.