expr_freq_filter: Filter differential state analysis results by gene expression...
In altairwei/rhapsodykit: A Set of Tools for BD Rhapsody WTA Downstream Analysis
View source: R/differential_state.R
expr_freq_filter R Documentation
Filter differential state analysis results by gene expression frequencies.
Description
Only retain genes that are expressed in an average of given percentage of
cells in at least 1 group.
Usage
expr_freq_filter(results, sce, percent = 0.1)
Arguments
results
Results returned by pbDS or
pseudobulk_diff_state
sce
A SingleCellExperiment object. The following
cell metadata (colData) columns have to be provided:
sample_idunique sample identifiers
cluster_idsubpopulation (cluster) assignments
group_idexperimental group/condition
percent
Minimum percentage of cells in which a gene expressed.
Value
Same as tbl_list
altairwei/rhapsodykit documentation built on Feb. 1, 2023, 8:52 a.m.
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View source: R/differential_state.R
| expr_freq_filter | R Documentation |
Filter differential state analysis results by gene expression frequencies.
Description
Only retain genes that are expressed in an average of given percentage of cells in at least 1 group.
Usage
expr_freq_filter(results, sce, percent = 0.1)
Arguments
results |
Results returned by |
sce |
A SingleCellExperiment object. The following
cell metadata (
|
percent |
Minimum percentage of cells in which a gene expressed. |
Value
Same as tbl_list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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