Files in altairwei/rhapsodykit
A Set of Tools for BD Rhapsody WTA Downstream Analysis
.Rbuildignore
.Rprofile
.gitignore
.lintr
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R
R/differential_abundance.R
R/differential_state.R
R/pseudobulk.R
R/seurat.R
R/upsetplot.R
R/utils-pipe.R
R/utils.R
R/visualization.R
man/barplot_cluster_abundance.Rd
man/calculateClusterProportion.Rd
man/calculate_pseudo_bulk.Rd
man/diff_state_apply.Rd
man/diff_state_filter.Rd
man/diff_state_format.Rd
man/diff_state_pull.Rd
man/diff_state_ranked_lfc.Rd
man/diff_state_significant.Rd
man/diff_state_significant_lfc.Rd
man/diff_state_subset.Rd
man/diff_state_summary.Rd
man/expr_freq_filter.Rd
man/fetch_cellular_data.Rd
man/findDACombinedClusters.Rd
man/findDiffAbundantCells.Rd
man/findDiffAbundantMarkers.Rd
man/find_all_avg_expr_genes.Rd
man/find_all_conserved_markers.Rd
man/find_all_diff_expr_genes.Rd
man/find_group_marker_genes.Rd
man/from_list_to_upset.Rd
man/genecount_diff_state.Rd
man/generate_seurat_plots.Rd
man/heatmap_cross_sample.Rd
man/integrated_sample_analysis.Rd
man/integration_analysis.Rd
man/integration_anchorset.Rd
man/intersection_counts.Rd
man/key_mapping.Rd
man/make_integrated_pseudo_bulk.Rd
man/make_pseudo_bulk.Rd
man/merge_sample.Rd
man/onlyDAscore.Rd
man/perform_diff_gene.Rd
man/perform_find_all_markers.Rd
man/pipe.Rd
man/plotDACellLabel.Rd
man/plotDACellScore.Rd
man/plotDAEmbedding.Rd
man/plotDAOverlap.Rd
man/plotDARandomPermutation.Rd
man/plotDASite.Rd
man/plot_avg_expr_genes.Rd
man/prepare_muscat_sce.Rd
man/pseudobulk_diff_state.Rd
man/read_expression_st.Rd
man/read_molecules_csv.Rd
man/read_mols_per_cell.Rd
man/read_mtx.Rd
man/read_rhapsody_wta.Rd
man/read_unfiltered_csv.Rd
man/reassign_sample.Rd
man/save_expression_matrix.Rd
man/save_plot.Rd
man/save_to_disk.Rd
man/single_sample_analysis.Rd
man/upset_dataframe.Rd
man/upset_plot.Rd
man/upset_updown_regulated.Rd
man/volcano_diff_state.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/testthat.R
tests/testthat/test-psuedobulk.R
tests/testthat/test-seurat-utils.R
