findDiffAbundantCells: Run DAseq algorithm

In altairwei/rhapsodykit: A Set of Tools for BD Rhapsody WTA Downstream Analysis

Run DAseq algorithm

Description

This function warp Steps 1~3 of DAseq algorithm from package getDAcells

Usage

findDiffAbundantCells(
  obj,
  ctrl,
  stim,
  reduction = "pca",
  npc = 20,
  pred.thres = NULL,
  k.vector = NULL,
  resolution = 0.05
)

Arguments

obj	Seurat object
ctrl	Control condition
stim	Stimulus condition
reduction	Which dimensionality reduction to use
npc	How many dimensions to use as input features
pred.thres	length-2 vector, top and bottom threshold on DA measure, default NULL, select significant DA cells based on permutation
k.vector	vector, k values to create the score vector
resolution	parameter for Seurat function FindClusters(), default 0.05

altairwei/rhapsodykit documentation built on Feb. 1, 2023, 8:52 a.m.