volcano_diff_state: Volcano plot for differential state analysis.

In altairwei/rhapsodykit: A Set of Tools for BD Rhapsody WTA Downstream Analysis

Volcano plot for differential state analysis.

Description

Volcano plot for differential state analysis.

Usage

volcano_diff_state(
  x,
  logfc_cut = 1,
  pval_cut = 0.05,
  y_var = "p_adj.loc",
  title = NULL
)

Arguments

x	A data.frame contains following column: gene gene names logFC log2 fold change p_adj.loc adjusted p-value cluster_id data source
logfc_cut	Where to add cutoff-line for logFC.
pval_cut	Where to add cutoff-line for P value.
y_var	Which column should be used as y.
title	Plot title.

altairwei/rhapsodykit documentation built on Feb. 1, 2023, 8:52 a.m.