Man pages for anthony-aylward/chenimbalance
Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)
| accb | SNVs that are accessible to allele-specific binding |
| alleledb_beta_binomial | optimize beta-binomial parameters |
| asb | SNVs associated with allele-specific binding (ASB) |
| bin_according_to_empirical_distribution | Bin the combined and sorted pseudodistribution |
| bisect | bisect |
| change_counts_into_density | Change "counts" into density |
| chenimbalance_color_palette | Provide a color palette |
| choose_overdispersion_parameter | Choose overdispersion parameter |
| choose_probability_of_success_parameter | Choose probability of success parameter |
| cutoff | cutoff |
| empirical_allelic_ratio | Empirical allelic Ratio |
| fp | FP |
| graded_weights_for_sse_calculation | Graded weights for SSE calculation |
| nulldistrib | Weighted beta/binomial distribution |
| optimize_overdispersion_parameter | Optimize the overdispersion parameter |
| optimize_probability_of_success_parameter | Optimize the probability of success parameter |
| parametric_probability_mass | A parametric probability mass value |
| plot_distributions | Plot the emppirical, binomial, and beta-binomial... |
| weight_by_empirical_counts | Weight by empirical counts |
| weight_with_actual_counts_in_empirical | Weight each coverage level with actual counts in empirical |
