alleledb_beta_binomial: optimize beta-binomial parameters
In anthony-aylward/chenimbalance: Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)
Description
Usage
Arguments
Value
Description
optimize beta-binomial parameters
Usage
1
2
alleledb_beta_binomial(total, allelic_ratio, minN = 6, binSize = 40,
r_by = 0.1)
Arguments
total
integer; total number of reads at each site
allelic_ratio
numeric; allelic ratio at each site
minN
minimum coverage level
binSize
approximate number of bins
Value
list
anthony-aylward/chenimbalance documentation built on May 17, 2019, 12:50 p.m.
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Description Usage Arguments Value
Description
optimize beta-binomial parameters
Usage
1 2 | alleledb_beta_binomial(total, allelic_ratio, minN = 6, binSize = 40,
r_by = 0.1)
|
Arguments
total |
integer; total number of reads at each site |
allelic_ratio |
numeric; allelic ratio at each site |
minN |
minimum coverage level |
binSize |
approximate number of bins |
Value
list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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