Man pages for anthony-aylward/chenimbalance
Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

accbSNVs that are accessible to allele-specific binding
alleledb_beta_binomialoptimize beta-binomial parameters
asbSNVs associated with allele-specific binding (ASB)
bin_according_to_empirical_distributionBin the combined and sorted pseudodistribution
bisectbisect
change_counts_into_densityChange "counts" into density
choose_overdispersion_parameterChoose overdispersion parameter
choose_probability_of_success_parameterChoose probability of success parameter
color_paletteProvide a color palette
cutoffcutoff
empirical_allelic_ratioEmpirical allelic Ratio
fpFP
graded_weights_for_sse_calculationGraded weights for SSE calculation
nulldistribWeighted beta/binomial distribution
optimize_overdispersion_parameterOptimize the overdispersion parameter
optimize_probability_of_success_parameterOptimize the probability of success parameter
parametric_probability_massA parametric probability mass value
plot_distributionsPlot the emppirical, binomial, and beta-binomial...
weight_by_empirical_countsWeight by empirical counts
weight_with_actual_counts_in_empiricalWeight each coverage level with actual counts in empirical
anthony-aylward/chenimbalance documentation built on Oct. 9, 2018, 10:09 a.m.