choose_overdispersion_parameter: Choose overdispersion parameter

In anthony-aylward/chenimbalance: Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

Description

Minimize sse for betabinomials

Usage

choose_overdispersion_parameter(w_grad, w, empirical, sse, minN = 6,
  binSize = 40, b_choice = 0, r_sta = 0.1, r_end = 0.99,
  r_by = 0.1, p = 0.5, cores = detectCores())

Arguments

w_grad	w_grad
w	w
empirical	empirical
sse	sse
minN	minimum coverage level
binSize	approximate number of bins
r_sta, r_end	start and end of the parameter range
r_by	step of the parameter range
cores	number of cores to use

Value

list

anthony-aylward/chenimbalance documentation built on May 17, 2019, 12:50 p.m.