Files in anthony-aylward/chenimbalance
Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

.gitignore
DESCRIPTION
NAMESPACE
R/color_palette.R R/data.R R/empirical_allelic_ratio.R R/graded_weights.R R/imbalance.R R/nulldistrib.R R/optimize.R R/overdispersion.R R/plot_distributions.R R/prob.R R/weight_by_empirical_counts.R README.md
chenimbalance.Rproj
data/accb.rda
data/asb.rda
man/accb.Rd man/alleledb_beta_binomial.Rd man/asb.Rd man/bin_according_to_empirical_distribution.Rd man/bisect.Rd man/change_counts_into_density.Rd man/choose_overdispersion_parameter.Rd man/choose_probability_of_success_parameter.Rd man/color_palette.Rd man/cutoff.Rd man/empirical_allelic_ratio.Rd man/fp.Rd man/graded_weights_for_sse_calculation.Rd man/nulldistrib.Rd man/optimize_overdispersion_parameter.Rd man/optimize_probability_of_success_parameter.Rd man/parametric_probability_mass.Rd man/plot_distributions.Rd man/weight_by_empirical_counts.Rd man/weight_with_actual_counts_in_empirical.Rd
vignettes/figure/atac_empirical_dist-1.png
vignettes/figure/atac_optimize_parameter-1.png
vignettes/figure/atac_plot_initial_dist-1.png
vignettes/figure/atac_plot_space-1.png
vignettes/figure/ctcf_empirical_dist-1.png
vignettes/figure/ctcf_optimize_parameter-1.png
vignettes/figure/ctcf_plot_initial_dist-1.png
vignettes/figure/ctcf_plot_space-1.png
vignettes/figure/dnase_empirical_dist-1.png
vignettes/figure/dnase_optimize_parameter-1.png
vignettes/figure/dnase_plot_initial_dist-1.png
vignettes/figure/dnase_plot_space-1.png
vignettes/figure/npbin_atac_estimated_null-1.png
vignettes/figure/npbin_ctcf_estimated_null-1.png
vignettes/figure/npbin_dnase_estimated_null-1.png
vignettes/figure/overdisp_empirical_dist-1.png
vignettes/figure/overdisp_optimize_parameter-1.png
vignettes/figure/overdisp_plot_initial_dist-1.png
vignettes/figure/overdisp_plot_space-1.png
vignettes/figure/unnamed-chunk-10-1.png
vignettes/figure/unnamed-chunk-2-1.png
vignettes/figure/unnamed-chunk-3-1.png
vignettes/figure/unnamed-chunk-4-1.png
vignettes/figure/unnamed-chunk-5-1.png
vignettes/figure/unnamed-chunk-6-1.png
vignettes/figure/unnamed-chunk-8-1.png
vignettes/imbalance.Rmd vignettes/imbalance.md vignettes/npbin-atac.Rmd vignettes/npbin-atac.md vignettes/npbin-ctcf.Rmd vignettes/npbin-ctcf.md vignettes/npbin-dnase.Rmd vignettes/npbin-dnase.md vignettes/overdispersion.Rmd vignettes/overdispersion.md vignettes/overdispersion.pdf vignettes/prob-test.Rmd
anthony-aylward/chenimbalance documentation built on Oct. 9, 2018, 10:09 a.m.